Data Preparation Guides¶
Learn about supported data formats and how to prepare your datasets for visualization in BrainDataPortal. BrainDataPortal is a comprehensive platform for single-cell, spatial transcriptomics, and other omics data visualization and exploration. This documentation will guide you through the data preparation processes for different data types.
Supported data modalities¶
This app supports the visualization of the following data assays:
- Single-cell RNA-seq: UMAP plots, gene feature plot, cell cluster markers, DEGs in each cluster
- Single-cell ATAC-seq: sc-eQTL, sc-eQTL, peak signals, GWAS
- Visium Spatial Transcriptomics: UMAP plots, gene feature plot, spot cluster markers, DEGs in each cluster